Resources
Useful links, etc
Featured
Charles Darwin And The Terrible, Horrible, No Good, Very Bad DayI guess everybody, even the smartest people who ever lived, have days when they feel dumb — really, really dumb. Oct. 1, 1861, was that kind of day for Charles Darwin.
A quick, concentrated guides for mastering some of the professional challenges research scientists face in their careers.
Reading and writing papers
Manuscript writing adviceHow small changes to a paper can help to smooth the review process.
The Science of Scientific WritingA guide to revising/improving your scientific writing.
How to read a scientific articleEfficient Reading of Papers in Science and Technology.
Ten simple rules for structuring papersA short guide to writing scientific papers.
Nature English Communication for ScientistsNature guide to writing.
NIH Clear Language GuideThis website consists of five sections and a checklist you can print. In each section, you will find a number of cards you can flip through to learn about using plain language in your work. When you are done with the final section, you can print a certificate of completion.
Nature summary paragraphColor-coded example of how to write an abstract.
Latex equation editorFor when you really need a high quality image of your latex equation and don’t want to screenshot it.
Latex symbol finderWhen you can’t remember what the latex name is for a symbol, detexify has your back. It lets you draw the symbol and will show close matches.
Latex table generatorAn easy way to create beautiful latex tables.
Scientific Writing Made EasyA step-by-step guide to writing a scientific manuscript.
How to read a paperA 3 pass approach to reading journal articles.
Visualizations
Designing an award-winning posterBlog post describing good poster design principles.
Fundamentals of Data VizA textbook and accompanying codebase on data visualization.
Silhouette imagesFree silhouette images of animals, plants, etc.
Data To VizFrom Data to Viz leads you to the most appropriate graph for your data. It links to the code to build it and lists common caveats you should avoid.
NIAID BioArt repositoryBuild figures, presentations, and illustrations with 2,000+ science and medical art visuals. This collection of high-quality, scientifically accurate vectors, icons, and brushes is freely available within the public domain.
Friends Dont Let Friends Make Bad GraphsChenxin Li’s guide to data visualization. Friends don’t let friends make certain types of data visualization - What are they and why are they bad.
Visualization Workshop SlidesSlides from Dan Larremore and Sam Way’s workshop on data visualization.
Tips and cheatsheets by and for MatPlotLib.
ColorHunt Palette GuideA whole lot of color palettes.
SuperPlotsWe provide examples and practical tutorials for creating figures that communicate both the cell-level variability and the experimental reproducibility.
Coding
Good enough practices in scientific computingThis paper presents a set of good computing practices that every researcher can adopt, regardless of their current level of computational skill.
The Missing Semester of Your CS EducationLearning the command line, data management, and other important CS skills that you may not have learned yet.
Alexs Lemonade Stand Training ModulesThis repository is a collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.
Bash tutorialsAn introduction to bash scripting.
Data Carpentry Genomics WorkshopThis workshop teaches data management and analysis for genomics research.
What they forgot to teach you about RThis book focuses on content intrinsically related to the infrastructure surrounding data analysis in R, but does not delve into the data analysis itself.
DIY.transcriptomicsBest practices for the analysis of high-throughput sequencing data from gene expression (RNA-seq) studies.
CCDL Workshop MaterialsWorkshop materials from the Childhood Cancer Data Lab.
Current Topics in Bioinformatics workshopsTutorials by the Harvard Chang bioinformatics core.
Posit R snippetsA collection of R code snippets and instructions featuring up-to-date best practices for coding in R
Enabling scientists to understand and analyze their own experimental data by providing instruction and training in bioinformatics software, databases, analyses techniques, and emerging technologies.
scRNA Best Practices PythonThis book aims to guide both beginners and experienced professionals in best practices of single-cell sequencing analysis.
scRNA Best Practices BioconductorThis book will show you how to make use of cutting-edge Bioconductor tools to process, analyze, visualize, and explore scRNA-seq data.
scRNA Best Practices BioconductorTutorials from the 2025 epigenomics workshop.
AI and statistics
Introduction to statistics (original R version)A introductory book to statistical analysis using R.
Introduction to statistics (python version)A introductory book to statistical analysis using Python.
Statistical vignette of the dayInteresting statistical anomalies and correlations.
R EasyStatsA collection of R packages for easy statistics and models.
The Elements of Statistical LearningRecommended textbook on data mining, statistics, and predictive modeling.
Monte Carlo simulations explainedA crash course on how to do Monte Carlo simulations and the basics of running code on a cluster.
R for Data ScienceIntroduction to R coding for data science applications.
Google Machine Learning EducationLearn to build ML products with Google’s Machine Learning Courses.
A flowchart to help select which statistical should be used in a variety of common scenarios.
GraphPad Principles of StatisticsThe first half of this Guide reviews general principles of statistics, and is not at all specific to GraphPad Prism.
Common statistical tests are linear modelsShows the linear models underlying common parametric and non-parametric tests.
Empowering statistical methods for cellular and molecular biologistsPollard, Pollard, and Pollard provide guidelines for using statistical methods to analyze the types of experiments reported in cellular and molecular biology journals.
More
Seven year postdocThe Awesomest 7-Year Postdoc or: How I Learned to Stop Worrying and Love the Tenure-Track Faculty Life
Gender bias calculatorTool for identifying gendered language in job ads and letters of ref.
Ten simple rules for attending your first conferenceTen simple rules for attending your first conference.
How to schedule a committee meetingClaus Wilke’s guide to getting 5 faculty into a room at the same time to listen to your annual research update.
UF Graduate School Planning ResourcesIDP, roadmap, and other resources for UF graduate students.